Visualization of NGS Data using IGV (v2.4+) - Documentation
Elodie GIRARD, Sarah GUINCHARD, Rachel LEGENDRE, Pierre PERICARD, Olivier QUENEZ, Jean-Pascal MENEBOO and the EBAII team
2024-11-13
1
General Information
1.1
Why use IGV?
Visualization and interactive exploration of large genomic datasets
Large range of accepted file formats
http://software.broadinstitute.org/software/igv/home
Main file formats allowed in IGV
Data.Type
Format
ChIPSeq, RNAseq
Bigwig, Bedgraph
Genome Annotation
GFF, GTF, BED, VCF
Sequence Alignments
Indexed BAM
1