//Property: name
"name": "Ontology... from scratch !"

//Property: abstract
"abstract": "This document introduces how to construct functional annotation resources and organism-specific databases from scratch, particularly for species lacking curated genomic annotations. It covers strategies for finding existing databases, transferring annotations from related organisms, and using tools such as eggNOG-mapper, FANTASIA, and the R package AnnotationForge. A step-by-step workflow illustrates how to generate, install, and use a custom annotation package for downstream enrichment analyses like ORA and GSEA."

//Property: author
"author":  [
  {
    "@type": "Person",
    "name": "Claire TOFFANO-NIOCHE"
  },{ 
    "@type": "Person",
    "name": "Audrey ONFROY"
  }
]

//Property: description
"description": "This document introduces how to construct functional annotation resources and organism-specific databases from scratch, particularly for species lacking curated genomic annotations. It covers strategies for finding existing databases, transferring annotations from related organisms, and using tools such as eggNOG-mapper, FANTASIA, and the R package AnnotationForge. A step-by-step workflow illustrates how to generate, install, and use a custom annotation package for downstream enrichment analyses like ORA and GSEA."

//Property: audience
"audience": {
    "@type": "Audience",
    "audienceType": "beginner in high-throughput sequencing data analysis, starting at graduate level" 
}

//Property: educationalLevel
"educationalLevel": "Beginner"

//Property: inLanguage
"inLanguage": ["en-US"]
  
//Property: teaches
"teaches": [
    "The student will be able to understand how ORA and GSEA depend on structured gene annotations",
    "The student will be able to identify existing annotation resources and evaluate their suitability for a target species",
    "The student will be able to transfer annotations using orthology or automated tools",
    "The student will be able to use AnnotationForge to build, install, and apply a custom organism annotation package"
  ]

//Property: keywords
"keywords": "annotation, ontology, ORA/GSEA, AnnotationForge, custom database"

//Property: learningResourceType (presentation or handout)
"learningResourceType": ["presentation"]

//Property: license
// "https://creativecommons.org/licenses/by-sa/4.0/"
// "https://mit-license.org/"
"license": ["https://creativecommons.org/licenses/by-sa/4.0/"]

//Property: dateModified
"dateModified": "2025-11-17T0:00:00+00:00"