# Packages to install before the session

R >= 4 with Rstudio or another IDE  
data.table  
DT  

## Topic 1  

### MOFA  
ggplot2  
gage  
MOFA2  
MOFAdata  
msigdbr  

### RGCCA
RGCCA  
FactoMineR  
factoextra  
ggpubr  
corrplot  
stats  
graphics  

## Topic 2
WGCNA  
compositions  
pheatmap  
SNFtool  
igraph  
mixOmics  

Cytoscape (https://cytoscape.org/download.html, version >= 3.7) with these applications :  
	- yFiles Layout Algorithm
	- LegendCreator

## Topic 3
tidyverse  
TCGAbiolinks (facultatif + via Bioconductor)  
SummarizedExperiment (facultatif + via Bioconductor)  
clusterProfiler (via Bioconductor)  
enrichR  
DOSE (via Bioconductor)  
AnnotationHub (via Bioconductor)  
neo4r  
tidytext  
GO.db (via Bioconductor)  
GOxploreR  
annotate  
visNetwork  
dplyr  
tidyr  
readr  
visNetwork  
diffuStats