Résumé de section
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Scientific coordination
- Marc Deloger (Gustave Roussy)
Dr. Marc Deloger is Head of Bioinformatics Core Facility of Gustave Roussy Hospital. He has expertise in analysis of many different types of NGS data but mainly in RNA-seq (bulk, single-cell and long reads) and WES. He is part of the BioInformatics French Society (SFBI) council. - Marie-Agnès Dillies (Institut Pasteur, IFB Pasteur Hub)
Dr. Marie-Agnès Dillies is head of the Bioinformatics and Biostatistics Hub of the Institut Pasteur. She has expertise in statistical analysis of gene expression data (Dillies et al, Briefings in Bioinformatics 2013). She is co-animating the StatOmique group. - Kevin Lebrigand (CoBiODA, IPMC CNRS, Sophia Antipolis)
Dr. Kevin Lebrigand is Head of CoBiODA Bioinformatics Core Facility of Institute of Molecular and Cellular Pharmacology. He has a wide expertise in genomics focusing his research methodological developments around single-cell and spatial long-read approaches. - Nathalie Lehmann (Institut Pasteur, IFB Pasteur Hub)
Dr. Nathalie Lehmann is a research engineer in Bioinformatics. She recently joined the Hub of Bioinformatics and Biostatistics of the Institut Pasteur. She is an expert in single-cell transcriptomics (short-read and long-read Nanopore). - Agnès Paquet (Syneos Health, Sophia Antipolis)
Agnes Paquet is an expert in statistical analysis and mining of large datasets from high-throughput assays, including NGS data (bulk and single cell). She is specialized in biomarkers discovery and in development and validation of assays for diagnostic and resistance assessment (HIV and breast cancer) and regulatory bioanalysis. - Nicolas Servant (Institut Curie, INSERM U900, Mines ParisTech, IFB Curie bioinfo)
Dr. Nicolas Servant is co-Director of Bioinformatics core facility at Institut Curie, Paris. He has a wide expertise in NGS, including epigenomics, in particular 3D conformation of the chromatin. He recently joined the Institut Curie single-cell initiative. - Morgane Thomas-Chollier (ENS-PSL, IFB-core UAR 3601)
Dr. Morgane Thomas-Chollier is Associate Professor in Bioinformatics at Ecole Normale Supérieure Paris, head of the ENS Genomics platform and adjunct director of Institut Français de Bioinformatique. She has expertise in single-cell transcriptomics (short read and long-read Nanopore), bulk epigenomics and motif analysis in genomic sequences.
Pedagogical team- Quentin Blampey (Université Paris-Saclay)
- Aziza Caidi (Gustave Roussy)
- Morgane Fierville (CoBiODA, IPMC CNRS, Sophia Antipolis)
- Ali Hamraoui (ENS-PSL)
- Kevin Lebrigand (CoBiODA, IPMC CNRS, Sophia Antipolis)
- Nathalie Lehmann (Institut Pasteur, IFB Pasteur Hub)
- Eamon McAndrew (CoBiODA, IPMC CNRS, Sophia Antipolis)
- Rémi Montagne (Institut Curie, INSERM U900, IFB Curie bioinfo)
- Lorette Noiret (Institut Curie)
- Agnès Paquet (Syneos Health, Sophia Antipolis)
Technical coordination- Erwan Corre (IFB ABIMS FR2424 CNRS-UPMC, Station Biologique de Roscoff)
Dr. Erwan Corre is Head of Bioinformatics Core Facility of Roscoff Marine Station (ABiMS - NNCR IFB Platform) providing the computing infrastructure for the training. As a bio‐analyst, he has expertise in: assembly, curation and annotation of (meta-) transcriptomics and (meta-) genomic sequences on non-model organisms and environmental samples. He is part of the BioInformatics French Society (SFBI) council.
Administrative management- Olivier Sand & Lucie Khamvongsa-Charbonnier Institut Français de Bioinformatique (IFB)
- Marc Deloger (Gustave Roussy)